Installation

Note : If build problems, please remove the build directory if it exists, then retry :

$ rm -rf build

Dependencies

Mandatory Dependencies

  1. Armadillo
  2. boost (mpi, serialization, filesystem, system)

Optional Dependencies

  1. snappy
  2. Postgresql

Pre-Steps

  1. Make sure you have a “bin” directory in your home folder
  2. Append the bin folder to your path. Add the following line to your ~/.bashrc: export PATH=”$PATH:~/bin”
  3. $ source ~/.bashrc

Linux (Ubuntu 16.04)

This installation procedure should work for many recent Linux flavors. For the following we present the instructions specific for Ubuntu or derivatives.

  1. Install the Dependencies

    $ sudo apt-get install libarmadillo-dev libboost-all-dev cmake

  2. $ mkdir build && cd build && cmake -DBUILD_TESTS=OFF .. && make -j NUMBER_OF_CORES
    # replace NUMBER_OF_CORE by say = 4

  3. sudo make install

Mac

This has been tested on macOS 10.13.6.

  1. Install the Dependencies (with Homebrew : https://brew.sh/)

    $ brew install armadillo $ brew install boost $ brew install boost-mpi $ brew install postgresql $ brew install snappy

  2. $ mkdir build && cd build && cmake -DBUILD_MAC=ON -DBUILD_HOME=OFF .. && make -j NUMBER_OF_CORES
    # replace NUMBER_OF_CORE by say = 4

  3. sudo make install

Graham, Ceder, mp2b, ms2b

  1. $ module reset

  2. $ module load nixpkgs/16.09 gcc/5.4.0 armadillo boost-mpi snappy cmake

  3. $ mkdir build && cd build
    CXX=mpic++ cmake -DBUILD_GRAHAM=ON -DBUILD_MPI=ON -DBUILD_HOME=OFF ..
    make
  4. Copy the executaables to a know location on your path.
    For example: $ mkdir ~/bin && cp -i ../src/ctmo* ~/bin/
    Add the ~/bin to your path :
    in ~/.bashrc add the following line at the end:

    export PATH=”$PATH:~/bin”

Beluga

  1. $ module reset

  2. $ module load nixpkgs/16.09 gcc/7.3.0 cmake armadillo/7.950.1 snappy boost-mpi cmake

  3. $ mkdir build && cd build
    CXX=mpic++ cmake -DBUILD_GRAHAM=ON -DBUILD_MPI=ON -DBUILD_HOME=OFF ..
    make
  4. Copy the executaables to a know location on your path.
    For example: $ mkdir ~/bin && cp -i ../src/ctmo* ~/bin/
    Add the ~/bin to your path :
    in ~/.bashrc add the following line at the end:

    export PATH=”$PATH:~/bin”